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For the 2025-26 school year, there are 3 public schools serving 290 students in Fort Jones, CA (there are , serving 18 private students). 94% of all K-12 students in Fort Jones, CA are educated in public schools (compared to the CA state average of 90%).

The top ranked public schools in Fort Jones, CA are Fort Jones Elementary School and Scott Valley Junior High School. Overall testing rank is based on a school's combined math and reading proficiency test score ranking.

Fort Jones, CA public schools have an average math proficiency score of 30% (versus the California public school average of 34%), and reading proficiency score of 52% (versus the 47% statewide average). Schools in Fort Jones have an average ranking of 7/10, which is in the top 50% of California public schools.

Minority enrollment is 47% of the student body (majority Hispanic and American Indian), which is less than the California public school average of 80% (majority Hispanic).