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For the 2026 school year, there are 6 public schools serving 5,424 students in Bonita Springs, FL (there are , serving 339 private students). 94% of all K-12 students in Bonita Springs, FL are educated in public schools (compared to the FL state average of 86%).

The top-ranked public schools in Bonita Springs, FL are Bonita Springs Charter School, Bonita Springs Middle Center For The Arts and Spring Creek Elementary School. Overall testing rank is based on a school's combined math and reading proficiency test score ranking.

Bonita Springs, FL public schools have an average math proficiency score of 53% (versus the Florida public school average of 52%), and reading proficiency score of 49% (versus the 52% statewide average). Schools in Bonita Springs have an average ranking of 5/10, which is in the bottom 50% of Florida public schools.

Minority enrollment is 70% of the student body (majority Hispanic), which is more than the Florida public school average of 66% (majority Hispanic).