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For the 2026 school year, there are 2 public middle schools serving 1,472 students in Middleburg, FL.

The top-ranked public middle schools in Middleburg, FL are Wilkinson Junior High School and Clay Charter Academy. Overall testing rank is based on a school's combined math and reading proficiency test score ranking.

Middleburg, FL public middle schools have an average math proficiency score of 60% (versus the Florida public middle school average of 55%), and reading proficiency score of 47% (versus the 52% statewide average). Middle schools in Middleburg have an average ranking of 6/10, which is in the top 50% of Florida public middle schools.

Minority enrollment is 48% of the student body (majority Hispanic and Black), which is less than the Florida public middle school average of 66% (majority Hispanic).