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For the 2025-26 school year, there are 2 public middle schools serving 291 students in Waubun, MN.

The top ranked public middle school in Waubun, MN is Waubun Secondary. Overall testing rank is based on a school's combined math and reading proficiency test score ranking.

Waubun, MN public middle schools have an average math proficiency score of 17% (versus the Minnesota public middle school average of 40%), and reading proficiency score of 27% (versus the 49% statewide average). Middle schools in Waubun have an average ranking of 1/10, which is in the bottom 50% of Minnesota public middle schools.

Minority enrollment is 84% of the student body (majority American Indian), which is more than the Minnesota public middle school average of 38% (majority Black and Hispanic).