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For the 2026 school year, there are 3 public schools serving 627 students in Fort Yates, ND (there are , serving 296 private students). 68% of all K-12 students in Fort Yates, ND are educated in public schools (compared to the ND state average of 91%).

The top-ranked public school in Fort Yates, ND is Fort Yates Middle School. Overall testing rank is based on a school's combined math and reading proficiency test score ranking.

Fort Yates, ND public schools have an average math proficiency score of 10% (versus the North Dakota public school average of 39%), and reading proficiency score of 15% (versus the 44% statewide average). Schools in Fort Yates have an average ranking of 1/10, which is in the bottom 50% of North Dakota public schools.

Minority enrollment is 100% of the student body (majority American Indian), which is more than the North Dakota public school average of 29% (majority American Indian and Hispanic).